If you are interested in our research or want to join the lab, please feel free to contact us. This is not a link-free page. Please do not link without permission. Please send your inquiry about this home page, if any, by mail to the following address.

The University of Tokyo FERJANI ALI Lab.

Publications

Original Articles

  1. Gunji S, Oda Y, Imamura HT, Tsukaya H, Ferjani A. (2020) Excess pyrophosphate restrains pavement cell morphogenesis and alters organ flatness in Arabidopsis thaliana. Front Plant Sci. In press.
  2. Amano R, Nakayama H, Momoi R, Omata E, Gunji S, Takebayashi Y, Kojima M, Ikematsu S, Ikeuchi M, Iwase A, Sakamoto T, Kasahara H, Sakakibara H, Ferjani A, Kimura S. (2020) Molecular basis for natural vegetative propagation via regeneration in North American lake cress, Rorippa aquatica (Brassicaceae). Plant Cell Physiol., In press. doi: 10.1093/pcp/pcz202
  3. Lin, Wen-Hui., Jiang, Yu-Tong., Tang, Ren-Jie., Zhang, Yan-Jie., Ali, Ferjani., Xue, Hongwei., and Luan, Sheng. (2019) Two tonoplast proton pumps function in Arabidopsis embryo development. New Phytologist, In press
  4. Gunji S, Amano R, Kaneko S, Ferjani A, Kimura S. (2019) Development of experimental teaching material to learn asexual reproduction by using the high vegetative propagation capacity of Rorippa aquatica leaves. Jpn. J. Biol. Educ. 60(3):137-147.
    http://sbsej.jp/publish/
  5. Asaoka M, Inoue SI, Gunji S, Kinoshita T, Maeshima M, Tsukaya H, Ferjani A. (2019) Excess Pyrophosphate within Guard Cells Delays Stomatal Closure. Plant Cell Physiol., 60(4):875-887.
    https://academic.oup.com/pcp/article/60/4/875/5289541
  6. Yang Y, Tang RJ, Mu B, Ferjani A, Shi J, Zhang H, Zhao F, Lan WZ, Luan S. (2018) Vacuolar Proton Pyrophosphatase Is Required for High Magnesium Tolerance in Arabidopsis. International Journal of Molecular Sciences 19(11). pii: E3617. doi: 10.3390/ijms19113617.
    https://www.mdpi.com/1422-0067/19/11/3617
  7. Ferjani A, Kawade K, Asaoka M, Oikawa A, Okada T, Mochizuki A, Maeshima M, Hirai YM, Saito K, Tsukaya H (2018) Pyrophosphate inhibits gluconeogenesis by restricting UDP-glucose formation in vivo. Scientific Reports. 8:14696
    https://rdcu.be/8jmN
  8. Graus D, Konrad KR, Bemm F, Patir Nebioglu MG, Lorey C, Duscha K, Güthoff T, Herrmann J, Ferjani A, Cuin TA, Roelfsema MRG, Schumacher K, Neuhaus HE, Marten I, Hedrich R (2018) High V-PPase activity is beneficial under high salt loads, but detrimental without salinity. New Phytol. 219:1421-1432
    https://nph.onlinelibrary.wiley.com/doi/abs/10.1111/nph.15280
  9. Segami S, Tomoyama T, Sakamoto S, Gunji S, Fukuda M, Kinoshita S, Mitsuda N, Ferjani A, Maeshima M (2018) Vacuolar H+-pyrophosphatase and Cytosolic Soluble Pyrophosphatases Cooperatively Regulate Pyrophosphate Levels in Arabidopsis thaliana. The Plant Cell 30:1040-1061
    http://www.plantcell.org/content/30/5/1040.long
  10. Hanchi M, Thibaud MC, Légeret B, Kuwata K, Pochon N, Beisson F, Cao A, Cuyas L, David P, Doerner P, Ferjani A, Lai F, Li-Beisson Y, Mutterer J, Philibert M, Raghothama KG, Rivasseau C, Secco D, Whelan J, Nussaume L, Javot H (2018) The Phosphate Fast-Responsive Genes PECP1 and PPsPase1 Affect Phosphocholine and Phosphoethanolamine Content. Plant Physiol. 176(4):2943-2962.
    doi: 10.1104/pp.17.01246.
    http://www.plantphysiol.org/content/176/4/2943.long
  11. Takahashi K, Morimoto R, Tabeta H, Asaoka M, Ishida M, Maeshima M, Tsukaya H, Ferjani A (2017) Compensated Cell Enlargement in fugu5 is Specifically Triggered by Lowered Sucrose Production from Seed Storage Lipids. Plant Cell Physiol., 58(4):668-678.
    https://academic.oup.com/pcp/article-lookup/doi/10.1093/pcp/pcx021
  12. Tanaka N, Uno H, Okuda S, Gunji S, Ferjani A, Aoyama T, Maeshima M (2017) SRPP, a Cell Wall Protein is Involved in Development and Protection of Seeds and Root Hairs in Arabidopsis thaliana. Plant Cell Physiol., 58(4):760-769.
    https://academic.oup.com/pcp/article-lookup/doi/10.1093/pcp/pcx008
  13. Ferjani A, Maeshima M (2016) Editorial: Multiple facets of H+-pyrophosphatase and related enzymes. Front Plant Sci. 7:1265. doi: 10.3389/fpls.2016.01265.
    http://journal.frontiersin.org/article/10.3389/fpls.2016.01265/full
  14. Wang X, Wang H, Liu S, Ferjani A, Li J, Yan J, Yang X, Qin F (2016) Genetic variation in ZmVPP1 contributes to drought tolerance in maize seedlings. Nat Genet. 48(10):1233-1241. doi: 10.1038/ng.3636.
    http://www.nature.com/ng/journal/v48/n10/full/ng.3636.html
  15. Fukuda M, Segami S, Tomoyama T, Asaoka M, Nakanishi Y, Gunji S, Ferjani A, Maeshima M (2016) Lack of H+-pyrophosphatase prompts developmental damage in Arabidopsis leaves on ammonia-free culture medium. Front Plant Sci. 7:819. doi: 10.3389/fpls.2016.00819.
    http://journal.frontiersin.org/article/10.3389/fpls.2016.00819/full
  16. Asaoka M, Segami S, Ferjani A, Maeshima M (2016) Contribution of PPi-hydrolyzing function of vacuolar H+-pyrophosphatase in vegetative growth of Arabidopsis: Evidenced by expression of uncoupling mutated enzymes. Front. Plant Sci. 7:415. doi: 10.3389/fpls.2016.00415
    http://journal.frontiersin.org/article/10.3389/fpls.2016.00415/full
  17. Katano M, Takahashi K, Hirano T, Kazama Y, Abe T, Tsukaya H, Ferjani A (2016) Suppressor screen and phenotype analyses revealed an emerging role of the Monofunctional peroxisomal enoyl-CoA hydratase 2 in compensated cell enlargement. Front. Plant Sci. 7:132. doi: 10.3389/fpls.2016.00132
    http://journal.frontiersin.org/article/10.3389/fpls.2016.00132/full
  18. Amano R, Nakayama H, Morohoshi Y, Kawakatsu Y, Ferjani A, and Kimura S (2015) A Decrease in Ambient Temperature Induces Post-Mitotic Enlargement of Palisade Cells in North American Lake Cress. PLoS One, 10 (11): e0141247
    http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0141247
  19. Ferjani A, Hanai K, Gunji S, Maeda S, Sawa S, Tsukaya H (2015) Balanced cell proliferation and expansion is essential for flowering stem growth control. Plant Signal Behav. 10(3):e992755
    http://www.ncbi.nlm.nih.gov/pubmed/25831425
  20. Maeda S, Gunji S, Hanai K, Hirano T, Kazama Y, Ohbayashi I, Abe T, Sawa S, Tsukaya H, Ferjani A (2014) The Conflict between Cell Proliferation and Expansion Primarily Affects Stem Organogenesis in Arabidopsis. Plant Cell Physiol. 55:1994-2007
    http://pcp.oxfordjournals.org/content/55/11/1994.full.pdf+html
  21. Ferjani A, Ishikawa K, Asaoka M, Ishida M, Horiguchi G, Maeshima M, Tsukaya H (2013b) Class III compensation, represented by KRP2 overexpression, depends on V-ATPase activity in proliferative cells. Plant Signal Behav. 8(11). pii: e27204
    https://www.landesbioscience.com/journals/psb/article/27204/
  22. Ferjani A, Ishikawa K, Asaoka M, Ishida M, Horiguchi G, Maeshima M, Tsukaya H (2013a)Enhanced Cell Expansion in a KRP2 Overexpressor is Mediated by Increased V-ATPase Activity. Plant Cell Physiol. 54:1989-1998
    http://pcp.oxfordjournals.org/content/early/2013/10/16/pcp.pct138.full.pdf+html
  23. Hisanaga T, Ferjani A, Horiguchi G, Ishikawa N, Fujikura U, Kubo M, Demura T, Fukuda H, Ishida T, Sugimoto K, Tsukaya H (2013) The ATM-dependent DNA damage response acts as an upstream trigger for compensation in the fas1 mutation during Arabidopsis leaf development. Plant Physiology 162:831-841
    http://www.ncbi.nlm.nih.gov/pubmed/23616603
  24. Fukao Y, Yoshida M, Kurata R, Kobayashi M, Nakanishi M, Fujiwara M, Nakajima K, Ferjani A (2013) Peptide Separation Methodologies for In-depth Proteomics in Arabidopsis. Plant Cell Physiology 54:808-815
    http://pcp.oxfordjournals.org/content/54/5/808.full.pdf+html
  25. Ferjani A, Segami S, Horiguchi G, Sakata A, Maeshima M and Tsukaya H (2012) Regulation of pyrophosphate levels by H+-PPase is central for proper resumption of early plant development. Plant Signaling & Behavior 7:38-42
    https://www.landesbioscience.com/journals/psb/2011PSB0451R.pdf
  26. K. Hanai, Y. Kazama, T. Hirano, T. Abe, and A. Ferjani (2012) Identification of V-ATPase-independent candidate pathways that control cell expansion in Arabidopsis.
    RIKEN Accelerator Progress Report 45, p. 208
  27. M. Katano, Y. Kazama, T. Abe, and A. Ferjani (2011) Heavy-ion beam-mediated screening to evaluate leaf-size control in fugu5 mutant of Arabidopsis thaliana.
    RIKEN Accelerator Progress Report 44, p. 270
  28. Ferjani A, Segami S, Horiguchi G, Muto Y, Maeshima M, Tsukaya H (2011) Keep an Eye on PPi: The Vacuolar-Type H+-Pyrophosphatase Regulates Postgerminative Development in Arabidopsis. The Plant Cell 23:2895-2908
    http://www.plantcell.org/content/23/8/2895.full.pdf+html
    Introduced as IN BRIEF article by Gregory Bertoni (2011) A Surprising Role for Vacuolar Pyrophosphatase.The Plant Cell 23: 2808 (doi: http://dx.doi.org/10.1105/tpc.111.230813)
  29. Fukao Y, Ferjani A (2011) V-ATPase dysfunction under excess zinc inhibits Arabidopsis cell expansion. Plant Signaling & Behavior 6:1253-1255
    https://www.landesbioscience.com/journals/psb/FukaoPSB6-9r.pdf
  30. Fukao Y, Ferjani A, Tomioka R, Nagasaki N, Kurata R, Nishimori Y, Fujiwara M, Maeshima M (2011) iTRAQ Analysis Reveals Mechanisms of Growth Defects due to Excess Zinc in Arabidopsis. Plant Physiology 155:1893-1907
    http://www.plantphysiol.org/content/155/4/1893.full.pdf+html
  31. Fukao Y, Ferjani A, Fujiwara M, Nishimori Y, Ohtsu I (2009) Identification of zinc-responsive proteins in the roots of Arabidopsis thaliana using a highly improved method of two-dimensional electrophoresis. Plant Cell Physiology 50:2234-2239
    http://pcp.oxfordjournals.org/content/50/12/2234.full.pdf+html
  32. Ferjani A, Horiguchi G, Yano S, Tsukaya H (2007) Analysis of leaf development in fugu mutants of Arabidopsis reveals three compensation modes that modulate cell expansion in determinate organs. Plant Physiology 144:988-999
    http://www.plantphysiol.org/content/144/2/988.full.pdf+html
  33. Horiguchi G, Fujikura U, Ferjani A, Ishikawa N, Tsukaya H (2006) Large-scale histological analysis of leaf mutants using two simple leaf observation methods: identification of novel genetic pathways governing the size and shape of leaves. The Plant Journal 48:638- 644
    http://www.ncbi.nlm.nih.gov/pubmed/17076802
  34. Suzuki S, Ferjani A, Suzuki I, Murata N (2004) The SphS-SphR two-component system is the exclusive sensor for the induction of gene expression in response to phosphate limitation in Synechocystis. The Journal of Biological Chemistry 279:13234-13240
    http://www.jbc.org/content/279/13/13234.full.pdf+html
  35. Ferjani A, Mustardy L, Sulpice R, Marin K, Suzuki I, Hagemann M, Murata N (2003) Glucosylglycerol, a compatible solute, sustains cell division under salt stress. Plant Physiology 131:1628-1637
    http://www.plantphysiol.org/content/131/4/1628.full.pdf+html
  36. Mohanty A, Kathuria H, Ferjani A, Sakamoto A, Mohanty P, Murata N, Tyagi AK (2002) Transgenics of an elite indica rice variety Pusa Basmati 1 harbouring the codA gene are highly tolerant to salt stress. Theoretical and Applied Genetics 106:51-57
    http://www.ncbi.nlm.nih.gov/pubmed/?term=Mohanty+A%2C+Kathuria+H%2C+Ferjani+A%2C+Sakamoto+A%2C+Mohanty+P
  37. Ferjani A, Abe S, Ishikawa Y, Henmi T, Yuka Tomokawa, Nishi Y, Tamura N, Yamamoto Y (2001) Characterization of the stromal protease(s) degrading the cross-linked products of the D1 protein generated by photoinhibition of photosystem II. Biochimica Biophysica Acta 1503:385-395
    http://www.sciencedirect.com/science/article/pii/S0005272800002334#
  38. Ishikawa Y, Nakatani E, Henmi T, Ferjani A, Harada Y, Tamura N, Yamamoto Y (1999) Turnover of the aggregates and cross-linked products of the D1 protein generated by acceptor-side photoinhibition of photosystem II. Biochimica Biophysica Acta 1413:147-158
    http://www.sciencedirect.com/science/article/pii/S0005272899000936

Review Articles

  1. Ferjani A, Segami S, Horiguchi G, Muto Y, Maeshima M, Tsukaya H (2014b) Roles of the vacuolar H+-PPase in seed storage oil mobilization and plant development. Plant Morphology, In Press
  2. Ferjani A, Horiguchi G, Tsukaya H (2010) Organ size control in Arabidopsis: Insights from compensation studies. Plant Morphology 22:65-71
    https://www.jstage.jst.go.jp/article/plmorphol/22/1/22_1_65/_pdf
  3. Horiguchi G, Ferjani A, Fujikura U, Tsukaya H (2006) Coordination of cell proliferation and cell expansion in the control of leaf size in Arabidopsis thaliana. Journal of Plant Research 119:37-42
    http://download.springer.com/static/pdf/856/art%253A10.1007%252Fs10265-005-0232-4.pdf?auth66=1382791830_98557ce630d87f35c3bd9c40a70909d1&ext=.pdf

Books & Chapters

  1. Ferjani A, Segami S, Asaoka M, Maeshima M (2014a) Regulation of PPi Levels Through the Vacuolar Membrane H+-pyrophosphatase. U. Lüttge et al. (eds), Progress in Botany, Progress in Botany 75, pp. 145-165. DOI 10.1007/978-3-642-38797-5_5, © Springer-Verlag Berlin Heidelberg 2014
    http://link.springer.com/chapter/10.1007/978-3-642-38797-5_5
  2. Ferjani A, Yano S, Horiguchi G and Tsukaya H (2008) Control of leaf morphogenesis by long and short distance signaling: differentiation of leaves into sun or shade types and compensated cell enlargement, In: PLANT CELL MONOGRAPHS: Plant Growth Signaling, L. Bögre & G. T. S. Beemster, Eds. (Springer Berlin Heidelberg, Berlin, Heidelberg), pp. 47-62
    http://link.springer.com/chapter/10.1007/7089_2007_148
Page Top